We have a series of posts on how to access data in the NCBI Sequence Read Archive that we have assembled over time. These will hopefully guide you on a journey of discovery through that data!
- The perils of fast(er)q-dump
- SRA Metadata with JSON
- SRA Metadata
- SRA attributes
- Similarity Searching the SRA
- Search SRA Metadata in the Cloud
- Search SRA Data
- Runs and Experiments in the SRA
- Metagenomes with and without crAssphage
- Instruments in the SRA
- Identifying Metagenomes from the SRA in the Cloud
- How many bp of metagenomes are there in the SRA?
- Hidden SRA metadata
- Getting WGS data from GenBank via the SRA
- Getting data from the SRA
- fastq-dump options
- fastq-dump
- Describing metagenomes in the SRA
- All the ways to get metagenomics data from the SRA
- Accessing SRA in the Cloud