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SRA

We have a series of posts on how to access data in the NCBI Sequence Read Archive that we have assembled over time. These will hopefully guide you on a journey of discovery through that data!

  • The perils of fast(er)q-dump
  • SRA Metadata with JSON
  • SRA Metadata
  • SRA attributes
  • Similarity Searching the SRA
  • Search SRA Metadata in the Cloud
  • Search SRA Data
  • Runs and Experiments in the SRA
  • Metagenomes with and without crAssphage
  • Instruments in the SRA
  • Identifying Metagenomes from the SRA in the Cloud
  • How many bp of metagenomes are there in the SRA?
  • Hidden SRA metadata
  • Getting WGS data from GenBank via the SRA
  • Getting data from the SRA
  • fastq-dump options
  • fastq-dump
  • Describing metagenomes in the SRA
  • All the ways to get metagenomics data from the SRA
  • Accessing SRA in the Cloud

Contact Information for Rob Edwards

Office: BIO 231
Lab: Bio 212
Phone: +61 8 8201 3417
Email: robert.edwards@flinders.edu.au

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