Our new service,
AKA: how to remove contamination from your metagenome! We use sharks genomes, but it works with humans, corals, and other things too!
A while ago we wrote
This is trivial to do with modern sequence analysis tools, and so we provide recipes here for filtering your reads based on matches to a reference genome. Read more to find out how!
We also provide a snakefile that does all these steps. Set up the bowtie2 index, a directory of reads, and and output location, and it will generate mapped and unmapped reads for you!Continue reading