We use Google Scholar a lot to search the literature, but also to track our own works. Several grant administration systems use ORCID to retrieve citations. Here is how you can “easily” update ORCID with all your citations from Google Scholar.
Continue readingMonthly Archives: July 2020
Updating CAT/BAT with prophage data
CAT/BAT by Bastiaan von Meijenfeldt and Bas Dutilh is a terrific tool for assigning taxonomy to contigs or metagenome bins. However, phages, and especially prophages, cause some problems because their taxonomy clashes with the bacterial taxonomy. Here is how to update the taxonomic profiles to handle prophages somewhat better.
Continue readingThings I can never remember for Snakemake
These are some of the things that I can never remember how to do in snakemake but they make life just that little bit easier.
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