Tag Archives: ipython

iPython Notebook How-To: Gap-fill a model in PyFBA

Gap-fill a model in PyFBA

by Daniel Cuevas

Introduction

In this notebook, we will present the steps to generate a genome-scale metabolic model from RAST annotations, gap-fill the model on rich LB type media, and save the model to hard disk.

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iPython Notebook How-To: Generating, saving, and loading models in PyFBA

Generating, saving, loading models in PyFBA

by Daniel Cuevas

Introduction

In this notebook, we will present the steps to generate a genome-scale metabolic model from RAST annotations, save the model on your computer, and load the model from your computer.
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