As easy as it is to install PyFBA using the pip command, it can be quite cumbersome to do so when you are working on a system without granted administrative or sudo permissions. Here is a quick guide that has worked for me when installing PyFBA on a CentOS 6.3 system running a SunGrid Engine cluster system. If you are working on a Linux system and you do have admin and sudo permissions, please follow the install guide here. Continue reading
Our genome-scale metabolic model software, PyFBA, has been upgraded to version 1.2 recently. With new features ranging from a new Model class to Python 3 support, this release expands the usefulness of PyFBA. Version 1.2 has been updated on our GitHub master branch and PyPI. Read further to see more details.
by Daniel Cuevas
In this notebook, we will present the steps to generate a genome-scale metabolic model from RAST annotations, gap-fill the model on rich LB type media, and save the model to hard disk.
by Daniel Cuevas
In this notebook, we will present the steps to generate a genome-scale metabolic model from RAST annotations, save the model on your computer, and load the model from your computer.
Continue reading